Publications

Li Zhou’s Google ScholarLi Zhou’s PubMedLiqin Wang’s Google ScholarJoseph Plasek’s PubMedJoseph Plasek’s Google ScholarFoster Goss’s Google ScholarFoster Goss’s PubMed

2025

  • Blackley SV, Lo Y, Varghese S, Chang F, James, O, Seger DL, Blumenthal KG,  Goss, FR, Zhou L. Building an Allergy Reconciliation Module to Eliminate Allergy Discrepancies in Electronic Health Records. Journal of the American Medical Informatics Association. 2025.

2024

  • Du X, Novoa-Laurentiev J, Plasaek JM, Chuang YW, Wang L, Marshall G, Mueller SK, Chang F, Datta S, Paek H, Lin B, Wei Q, Wang X, Wang J, Ding H, Manion FJ, Du J, Bates DW, Zhou L. Enhancing Early Detection of Cognitive Decline in the Elderly: A Comparative Study Utilizing Large Language Models in Clinical Notes. EBioMedicine. 2024 Nov;109:105401. doi: 10.1016/j.ebiom.2024.105401. PMID: 38633810; PMCID: PMC11023645. https://www.thelancet.com/journals/ebiom/article/PIIS2352-3964(24)00437-7/fulltext
  • Hua Y, Wu J, Lin S, Li M, Zhang Y, Foer D, Wang S, Zhou P, Yang J, Zhou L. Streamlining social media information retrieval for public health research with deep learning. J Am Med Inform Assoc. 2024 Jun 20;31(7):1569-1577. doi: 10.1093/jamia/ocae118. PMID: 38718216; PMCID: PMC11187427.  https://academic.oup.com/jamia/article-abstract/31/7/1569/7667306?redirectedFrom=fulltext
  • Chen F, Wang L, Hong J, Jiang J, Zhou L. Unmasking bias in artificial intelligence: a systematic review of bias detection and mitigation strategies in electronic health record-based models. J Am Med Inform Assoc. 2024 Apr 19;31(5):1172-1183. doi: 10.1093/jamia/ocae060. PMID: 38520723; PMCID: PMC11031231. https://academic.oup.com/jamia/article/31/5/1172/7634193
  • Du X, Zhou Z, Wang Y, Chuang YW, Yang R, Zhang W, Wang X, Zhang R, Hong P, Bates DW, Zhou L. Generative Large Language Models in Electronic Health Records for Patient Care Since 2023: A Systematic Review. medRxiv [Preprint]. 2024 Aug 19:2024.08.11.24311828. doi: 10.1101/2024.08.11.24311828. PMID: 39228726; PMCID: PMC11370524. https://pubmed.ncbi.nlm.nih.gov/39228726/
  • Plasek JM, Hou PC, Zhang W, Ortega CA, Tan D, Atkinson BJ, Chuang Y-W, Baron RM, Zhou L. Adherence to Lung Protective Ventilation in ARDS: A Mixed Methods Study Using Real-Time Continuously Monitored Ventilation Data.  Resp Care. 2024. doi: 10.4187/respcare.12183
  • Plasek JM, Amato MG, Salem A, Foer D, Lipsitz S, Jackson GP, Bates DW, Zhou L. Adverse Drug Events in Ambulatory Care: A Cross-Sectional Study. Drug Safety. 2024:1-12. https://pubmed.ncbi.nlm.nih.gov/39621298/
  • Tan DJ, Plasek JM, Hou PC, Baron RM, Atkinson BJ, Zhou L. Investigating the Association Between Dynamic Driving Pressure and Mortality in COVID-19-Related Acute Respiratory Distress Syndrome: A Joint Modeling Approach Using Real-Time Continuously-Monitored Ventilation Data. Critical Care Explorations. 2024;6(3):e1043. https://pmc.ncbi.nlm.nih.gov/articles/PMC10917137/
  • Rotenstein L, Wang L, Zupanc SN, Penumarthy A, Laurentiev J, Lamey J, Farah S, Lipsitz S, Jain N, Bates DW, Zhou L, Lakin JR. Looking Beyond Mortality Prediction: Primary Care Physician Views of Patients’ Palliative Care Needs Predicted by a Machine Learning Tool. Appl Clin Inform. 2024 May;15(3):460-468. doi: 10.1055/a-2309-1599. Epub 2024 Apr 18. PMID: 38636542; PMCID: PMC11168809.
  • Wang Y, Wang L, Zhou Z, Laurentiev J, Lakin JR, Zhou L, Hong P. Assessing fairness in machine learning models: a study of racial bias using matched counterparts in mortality prediction for patients with chronic diseases. Journal of biomedical informatics. 2024;156:104677.
  • Wang Y, Zhou Z, Wang L, Laurentiev J, Hou P, Zhou L, Hong P. Counterpart Fairness – Addressing Systematic Between-group Differences in Fairness Evaluation. The 38th Conference on Neural Information Processing Systems (NeurIPS 2024) Workshop: Algorithmic Fairness through the Lens of Metrics and Evaluation (AMFE 2024).
  • Atlas SJ, Gallagher KL, McGovern SE, Wint AJ, Smith RE, Aman DG, Zhao W, Burdick TE, Orav EJ, Zhou L, Wright A, Tosteson ANA, Haas JS. Patient Perceptions on the Follow-Up of Abnormal Cancer Screening Test Results. J Gen Intern Med. 2024 Oct 18. doi: 10.1007/s11606-024-09128-4. Epub ahead of print. PMID: 39424768.
  • Laurentiev J, Kim DH, Mahesri M, Wang KY, Bessette LG, York C, Zakoul H, Lee SB, Zhou L, Lin KJ. Identifying Functional Status Impairment in People Living With Dementia Through Natural Language Processing of Clinical Documents: Cross-Sectional Study J Med Internet Res 2024;26:e47739. doi: 10.2196/47739PMID: 38349732PMCID: 10900085
  • Foer D, Rubins DM, Nguyen V, McDowell A, Quint M, Kellaway M, Reisner SL, Zhou L, Bates DW. Utilization of electronic health record sex and gender demographic fields: a metadata and mixed methods analysis. Journal of the American Medical Informatics Association. 2024;31(4):910-8.
  • Weiner SG, Lo Y-C, Carroll AD, Zhou L, Ngo A, Hathaway DB, Rodriguez CP, Wakeman SE. The incidence and disparities in use of stigmatizing language in clinical notes for patients with substance use disorder. Journal of addiction medicine. 2023;17(4):424-30.
  • Wyss R, Plasek JM, Zhou L, Bessette LG, Schneeweiss S, Rassen JA, Tsacogianis T, Lin KJ. Scalable Feature Engineering from Electronic Free Text Notes to Supplement Confounding Adjustment of Claims‐Based Pharmacoepidemiologic Studies. Clinical Pharmacology & Therapeutics. 2023;113(4):832-8.
  • Wu J, Wang L, Hua Y, Li M, Zhou L, Bates DW, Yang J. Trend and co-occurrence network of COVID-19 symptoms from large-scale social media data: infoveillance study. Journal of Medical Internet Research. 2023;25:e45419.
  • Weberpals J, Shaw PA, Lin KJ, Wyss R, Plasek JM, Zhou L, Ngan K, DeRamus T, Raman SR, Hammill BG. High-dimensional multiple imputation (HDMI) for partially observed confounders including natural language processing-derived auxiliary covariates. arXiv preprint arXiv:240510925. 2024.
  • Zhang Z, Hua Y, Zhou P, Lin S, Li M, Zhang Y, Zhou L, Liao Y, Yang J. Sexual and gender-diverse individuals face more Health challenges during COVID-19: A large-scale social media analysis with natural language processing. Health Data Science. 2024;4:0127.
  • Lemoine C, Zhou L, Phillips EJ, Blackley SV, Young M, Banerji A, King AJ, Blumenthal KG. Documentation of DRESS in the allergy list of patients with a prior history of DRESS. The Journal of Allergy and Clinical Immunology: In Practice. 2024.
  • Jaggers J, Samarakoon U, King A, Kroshinsky D, Bassir F, Salem A, Phillips E, Wang L, Zhou L, Blumenthal KG. Drug reaction with eosinophilia and systemic symptoms: medication adherence and quality of life in survivors. The Journal of Allergy and Clinical Immunology: In Practice. 2024;12(1):239-41. e1.
  • Soto CL, Zhou L, Phillips E, Blackley S, Young M, Banerji A, Blumenthal K. Documentation of Drug Reaction with Eosinophilia and Systemic Symptoms (DRESS) in the Allergy and Problem List of patients with a prior history of DRESS. Journal of Allergy and Clinical Immunology. 2024;153(2):AB157.
  • Samarakoon U, Wolfson AR, Zhou L, Bassir F, Phillips E, Kroshinsky D, Cucka B, Biglione B, Phadke NA, Jaggers J. Understanding the patient experience of drug reaction with eosinophilia and systemic symptoms: A qualitative study. Journal of the American Academy of Dermatology. 2024.
  • Kang M-J, Rossetti SC, Lowenthal G, Knaplund C, Zhou L, Schnock KO, Cato KD, Dykes PC. Designing and testing clinical simulations of an early warning system for implementation in acute care settings. JAMIA open. 2024;7(4):ooae092.
  • Blumenthal KG, Alvarez-Arango S, Kroshinsky D, Lo YC, Samarakoon U, Salem AR, Fu X, Bassir F, Wang L, Jaggers J, Phillips E, Zhou L. Drug reaction eosinophilia and systemic symptoms: Clinical phenotypic patterns according to causative drug. J Am Acad Dermatol. 2024 Jun;90(6):1240-1242. doi: 10.1016/j.jaad.2023.05.067. Epub 2023 Jun 3. PMID: 37276931; PMCID: PMC11285528.
  • Blackley S, Lemoine-Soto C, Zhou L, Ezeofor A, Lo Y-C, Blumenthal KG, Kroshinsky D. Clinical manifestations of drug reaction with eosinophilia and systemic symptoms in pediatric patients. JAAD Case Reports. 2024;53:163-6.
  • Dykes PC, Bowen M, Chang F, Chen J, Gray K, Laurentiev J, Liu L, Panta P, Sainlaire M, Song W, Syrowatka A, Thai T, Zhou L, Bates DW, Samal L, Lipsitz S. Testing of an Electronic Clinical Quality Measure for Diagnostic Delay of Venous Thromboembolism (DOVE) in Primary Care. AMIA Annu Symp Proc. 2024 Jan 11;2023:339-348. PMID: 38222335; PMCID: PMC10785865.
  • Syrowatka A, Pullman A, Pajares E, White K, Sainlaire M, Chen J, Chang F, Gray K, Laurentiev J, Song W, Thai T, Zhou L, Lipsitz SR, Bates DW, Samal L, Dykes PC. Accurately identifying incident cases of venous thromboembolism in the electronic health record: Performance of a novel phenotyping algorithm. Thromb Res. 2024 Nov;243:109143. doi: 10.1016/j.thromres.2024.109143. Epub 2024 Sep 7. PMID: 39303403.
  • RASHEDI S, Krishnathasan D, Khairani C, Bejjani A, Lo Y-C, Zarghami M, Mahajan S, Caraballo C, jimenez ceja jv, Jimenez D, Monreal M, Secemsky E, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain M, Appah-Sampong A, Aneja S, MOJIBIAN H, Goldhaber S, Wang L, Zhou L, Krumholz H, Piazza G, Bikdeli B. Abstract 4147439: Accuracy of Rule-based Natural Language Processing Models for Identification of Pulmonary Embolism. Circulation. 2024;150(Suppl_1):A4147439-A.
  • Narcisse DI, Kim H, Wruck LM, Stebbins AL, Muñoz D, Kripalani S, Effron MB, Gupta K, Anderson RD, Jain SK, Girotra S, Whittle J, Benziger CP, Farrehi P, Zhou L, Polonsky TS, Ahmad FS, Roe MT, Rothman RL, Harrington RA, Hernandez AF, Jones WS. Comparative Effectiveness of Aspirin Dosing in Cardiovascular Disease and Diabetes Mellitus: A Subgroup Analysis of the ADAPTABLE Trial. Diabetes Care. 2024 Jan 1;47(1):81-88. doi: 10.2337/dc23-0749. PMID: 37713477; PMCID: PMC10733644.
  • Krishnathasan D, RASHEDI S, Khairani C, Bejjani A, Lo Y-C, Zarghami M, Mahajan S, Caraballo C, jimenez ceja jv, Jimenez D, Monreal M, Secemsky E, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain M, Appah-Sampong A, Aneja S, MOJIBIAN H, Goldhaber S, Wang L, Zhou L, Krumholz H, Piazza G, Bikdeli B. Abstract 4144053: Age- and Sex- Differences in the Accuracy of Rule-based Natural Language Processing Models for Identification of Pulmonary Embolism. Circulation. 2024;150(Suppl_1):A4144053-A.
  • Wang L, Yang R, Sha Z, Kuraszkiewicz AM, Leonik C, Zhou L, Marshall GA. Assessing Risk Factors for Cognitive Decline Using Electronic Health Record Data: A Scoping Review. Research Square. 2024:rs. 3. rs-4671544.
  • Wang L, Yang R, Bates DW, Zhou L, Marshall GA, editors. Tracking the timeline: from initial documentation of cognitive decline to dementia diagnosis in the electronic health records. Alzheimer’s Association International Conference; 2024: ALZ.
  • Wang L, Novoa-Laurentiev J, Cook C, Srivatsan S, Hua Y, Yang J, Miloslavsky E, Choi HK, Zhou L, Wallace ZS. Identification of an ANCA-Associated Vasculitis Cohort Using Deep Learning and Electronic Health Records. medRxiv. 2024:2024.06. 09.24308603.
  • Li W, Hua Y, Zhou P, Zhou L, Xu X, Yang J. Characterizing Public Sentiments and Drug Interactions during COVID-19: A Pretrained Language Model and Network Analysis of Social Media Discourse. medRxiv. 2024:2024.06. 06.24308537.
  • Hua Y, Xia W, Bates DW, Hartstein GL, Kim HT, Li ML, Nelson BW, Stromeyer IV C, King D, Suh J, Zhou L, Torous J. Standardizing and Scaffolding Healthcare AI-Chatbot Evaluation. medRxiv. 2024:2024.07. 21.24310774.
  • Hua Y, Blackley SV, Shinn AK, Skinner JP, Moran LV, Zhou L. Identifying Psychosis Episodes in Psychiatric Admission Notes via Rule-based Methods, Machine Learning, and Pre-Trained Language Models. medRxiv. 2024.
  • Guan H, Novoa-Laurentiev J, Zhou L. SCD-Tron: Leveraging Large Clinical Language Model for Early Detection of Cognitive Decline from Electronic Health Records. medRxiv. 2024:2024.10. 31.24316386.
  • Bikdeli B, Khairani CD, Bejjani A, Lo Y-C, Mahajan S, Caraballo C, Jimenez JV, Krishnathasan D, Zarghami M, Rashedi S, Jimenez D, Barco S, Secemsky EA, Klok FA, Hunsaker AR, Aghayev A, Muriel A, Hussain MA, Appah-Sampong A, Lu Y, Lin Z, Mojibian H, Aneja S, Khera R, Konstantinides S, Goldhaber SZ, Wang L, Zhou L, Monreal M, Piazza G, Krumholz HM. Validating International Classification of Diseases Code 10th Revision algorithms for accurate identification of pulmonary embolism. Journal of Thrombosis and Haemostasis. 2024.
  • Bikdeli B, Bejjani A, Lo Y-C, Khairani CD, Mahajan S, Secemsky EA, Jimenez JV, Aghayev A, Hunsaker A, Wang L, Hussain M, Appah-Sampong A, Mojibian H, Lin Z, Aneja S, Barco S, Klok F, Konstantinides SV, Zhou L, Monreal M, Jimenez D, Piazza G, Krumholz HM. OPTIMIZING PHENOTYPING ALGORITHMS FOR IDENTIFYING PULMONARY EMBOLISM IN ELECTRONIC DATABASES: THE MULTICENTER PE-EHR+ STUDY. Journal of the American College of Cardiology. 2024;83(13_Supplement):2108-.
  • Bacare B, Rashedi S, Krishnathasan D, Khairani C, Bejjani A, Lo Y-C, Zarghami M, Mahajan S, Caraballo C, jimenez ceja jv, Jimenez D, Monreal M, Secemsky E, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain M, Appah-Sampong A, Aneja S, MOJIBIAN H, Goldhaber S, Wang L, Zhou L, Krumholz H, Piazza G, Bikdeli B. Abstract 4139067: Racial and Ethnic Variations in the Accuracy of International Classification of Diseases 10<sup>th</sup> Revision (ICD-10) Codes for Identifying Pulmonary Embolism. Circulation. 2024;150(Suppl_1):A4139067-A.

2023

  • Blumenthal K, Alvarez-Arango S, Kroshinsky D, Lo YC, Samarakoon U, Salem AR, Fu X, Bassir F, Wang L, Jaggers J, Phillips E, Zhou L. Drug Reaction Eosinophilia and Systemic Symptoms (DRESS): Clinical Phenotypic Patterns According to Causative Drug.  J Am Acad Dermatol. 2023 Jun 3:S0190-9622(23)01006-X. doi: 10.1016/j.jaad.2023.05.067. PMID: 37276931.
  • Hua Y, Wang L, Nguyen V, Rieu-Werden M, McDowell A, Bates DW, Foer D, Zhou L. A deep learning approach for transgender and gender diverse patient identification in electronic health records. Journal of Biomedical Informatics. 2023;147:104507.
  • Blackley SV, Salem A, Zhou L. Deep learning for detection of drug hypersensitivity reactions. J Allergy Clin Immunol. 2023 Mar 16:S0091-6749(23)00296-8. doi: 10.1016/j.jaci.2023.03.004. Epub ahead of print. PMID: 36931329.
  • Wang L, Park H, Vallamkonda S, Seger DL, Blackley SV, Garabedian PM, Goss F, Blumenthal KG, Bates DW, Murphy S, Zhou L. Dynamic reaction picklist for improving allergy reaction documentation: A usability study. Int J Med Inform. 2023 Feb;170:104939. doi: 10.1016/j.ijmedinf.2022.104939. Epub 2022 Dec 5. PMID: 36529027.
  • Wang L, Foer D, Zhang Y, Karlson EW, Bates DW, Zhou L. Post-Acute COVID-19 Respiratory Symptoms in Patients With Asthma: An Electronic Health Records-Based Study.  J Allergy Clin Immunol Pract. 2023 Mar;11(3):825-835.e3. doi: 10.1016/j.jaip.2022.12.003. Epub 2022 Dec 22. PMID: 36566779; PMCID: PMC9773736.
  • Wang L, Foer D, Zhang Y, Karlson EW, Bates DW, Zhou L. Post–acute COVID-19 respiratory symptoms in patients with asthma: an electronic health records–based study. The Journal of Allergy and Clinical Immunology: In Practice. 2023;11(3):825-35. e3.
  • Atlas SJ, Tosteson ANA, Wright A, Orav EJ, Burdick TE, Zhao W, Hort SJ, Wint AJ, Smith RE, Chang FY, Aman DG, Thillaiyapillai M, Diamond CJ, Zhou L, Haas JS. A Multilevel Primary Care Intervention to Improve Follow-Up of Overdue Abnormal Cancer Screening Test Results: A Cluster Randomized Clinical Trial. JAMA. 2023 Oct 10;330(14):1348-1358. doi: 10.1001/jama.2023.18755. PMID: 37815566; PMCID: PMC10565610.
  • Bassir F, Alvarez-Arango S, Kroshinsky D, Phillips E, Ezeofor AJ, Samarakoon U, Blackley SV, Wang L, Zhou L, Blumenthal KG. Drug reaction with eosinophilia and systemic symptoms (DRESS): clinical presentation and outcomes in people of color. The Journal of Allergy and Clinical Immunology: In Practice. 2023;11(11):3537-40.
  • Plasek JM, Zhou L. Applying a user-centred design machine learning toolkit to an autism spectrum disorder use case.  BMJ Health Care Inform. 2023 May;30(1):e100765. doi: 10.1136/bmjhci-2023-100765. PMID: 37164389; PMCID: PMC10174023.
  • MacPhaul E, Zhou L, Mooney SJ, Azrael D, Bowen A, Rowhani-Rahbar A, Yenduri R, Barber C, Goralnick E, Miller M. Classifying Firearm Injury Intent in Electronic Hospital Records Using Natural Language Processing.  JAMA Netw Open. 2023 Apr 3;6(4):e235870. doi: 10.1001/jamanetworkopen.2023.5870. PMID: 37022685; PMCID: PMC10080369.
  • Wu J, Wang L, Hua Y, Li M, Zhou L, Bates DW, Yang J. Trend and Co-occurrence Network of COVID-19 Symptoms From Large-Scale Social Media Data: Infoveillance Study.  J Med Internet Res. 2023 Mar 14;25:e45419. doi: 10.2196/45419. PMID: 36812402; PMCID: PMC10131634.
  • Weiner SG, Lo YC, Carroll AD, Zhou L, Ngo A, Hathaway DB, Rodriguez CP, Wakeman SE. The Incidence and Disparities in Use of Stigmatizing Language in Clinical Notes for Patients With Substance Use Disorder. J Addict Med. 2023 Jan 31. doi: 10.1097/ADM.0000000000001145. Epub ahead of print. PMID: 36719760.
  • Bikdeli B, Lo YC, Khairani CD, Bejjani A, Jimenez D, Barco S, Mahajan S, Caraballo C, Secemsky EA, Klok FA, Hunsaker AR, Aghayev A, Muriel A, Wang Y, Hussain MA, Appah-Sampong A, Lu Y, Lin Z, Aneja S, Khera R, Goldhaber SZ, Zhou L, Monreal M, Krumholz HM, Piazza G. Developing Validated Tools to Identify Pulmonary Embolism in Electronic Databases: Rationale and Design of the PE-EHR+ Study.  Thromb Haemost. 2023 Jun;123(6):649-662. doi: 10.1055/a-2039-3222. Epub 2023 Feb 21. PMID: 36809777.
  • Wyss R, Plasek JM, Zhou L, Bessette LG, Schneeweiss S, Rassen JA, Tsacogianis T, Lin KJ. Scalable Feature Engineering from Electronic Free Text Notes to Supplement Confounding Adjustment of Claims-Based Pharmacoepidemiologic Studies. Clin Pharmacol Ther. 2023 Apr;113(4):832-838. doi: 10.1002/cpt.2826. Epub 2023 Jan 11. PMID: 36528788.
  • Jin Y, Xiong Y, Shi D, Lin Y, He L, Zhang Y, Plasek JM, Zhou L, Bates DW, Tang C. Learning from undercoded clinical records for automated International Classification of Diseases (ICD) coding. J Am Med Inform Assoc. 2023 Feb 16;30(3):438-446. doi: 10.1093/jamia/ocac230. PMID: 36478240; PMCID: PMC9933053.
  • Powell N, Elkhalifa S, Guyer A, Garcez T, Sandoe J, Zhou L. Addressing the Challenges of Penicillin Allergy Delabeling With Electronic Health Records and Mobile Applications. J Allergy Clin Immunol Pract. 2023 Feb;11(2):414-421. doi: 10.1016/j.jaip.2022.10.037. Epub 2022 Nov 8. PMID: 36356924.
  • Wang L, Yang R, Laurentiev J, Gatchel J, Blacker D, Amariglio RE, Sperling RA, Zhang Y, Zhou L, Marshall GA. Evaluating depressive symptoms and risk of cognitive decline using longitudinal electronic health records. Alzheimer’s & Dementia. 2023;19:e078877.
  • Marks ME, Botta RK, Abe R, Beachkofsky TM, Boothman I, Carleton BC, Chung WH, Cibotti RR, Dodiuk-Gad RP, Grimstein C, Hasegawa A, Hoofnagle JH, Hung SI, Kaffenberger B, Kroshinsky D, Lehloenya RJ, Martin-Pozo M, Micheletti RG, Mockenhaupt M, Nagao K, Pakala S, Palubinsky A, Pasieka HB, Peter J, Pirmohamed M, Reyes M, Saeed HN, Shupp J, Sukasem C, Syu JY, Ueta M, Zhou L, Chang WC, Becker P, Bellon T, Bonnet K, Cavalleri G, Chodosh J, Dewan AK, Dominguez A, Dong X, Ezhkova E, Fuchs E, Goldman J, Himed S, Mallal S, Markova A, McCawley K, Norton AE, Ostrov D, Phan M, Sanford A, Schlundt D, Schneider D, Shear N, Shinkai K, Tkaczyk E, Trubiano JA, Volpi S, Bouchard CS, Divito SJ, Phillips EJ. Updates in SJS/TEN: collaboration, innovation, and community. Front Med (Lausanne). 2023 Oct 11;10:1213889. doi: 10.3389/fmed.2023.1213889. PMID: 37901413; PMCID: PMC10600400.
  • Mahajan S, Lo Y-C, Bejjani A, Khairani CD, Jimenez D, Barco S, Caraballo C, Secemsky EA, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain MA, Appah-Sampong A, MOJIBIAN H, Lu Y, Lin Z, Aneja S, Khera R, Goldhaber S, Zhou L, Monreal M, Piazza G, Krumholz HM, Bikdeli B, PE-EHR+. Abstract 16342: Age- and Sex-Differences in Accuracy of ICD-10 Codes for Identifying Adults With Pulmonary Embolism: PE-EHR+ Study. Circulation. 2023;148(Suppl_1):A16342-A.
  • Jin Y, Xiong Y, Shi D, Lin Y, He L, Zhang Y, Plasek JM, Zhou L, Bates DW, Tang C. Learning from undercoded clinical records for automated International Classification of Diseases (ICD) coding. Journal of the American Medical Informatics Association. 2023;30(3):438-46.
  • Ezeofor A, Lo Y, Blumenthal K, Zhou L, Kroshinsky D. 517 Clinical manifestations of DRESS in pediatric patients. Journal of Investigative Dermatology. 2023;143(5):S89.
  • Bikdeli B, Bejjani A, Khairani CD, Lo Y-C, Jimenez D, Barco S, Mahajan S, Caraballo C, Secemsky EA, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain MA, Appah-Sampong A, MOJIBIAN H, Lu Y, Lin Z, Aneja S, Khera R, Goldhaber S, Zhou L, Monreal M, Piazza G, Krumholz HM. Abstract 14344: Pitfalls of ICD-10 Codes for Identifying Pulmonary Embolism in Electronic Records: Results From the Multicenter PE-EHR+ Study. Circulation. 2023;148(Suppl_1):A14344-A.
  • Bejjani A, Khairani CD, Lo Y-C, Jimenez D, Barco S, Mahajan S, Caraballo C, Secemsky EA, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain MA, Appah-Sampong A, MOJIBIAN H, Lu Y, Lin Z, Aneja S, Khera R, Goldhaber S, Zhou L, Monreal M, Krumholz HM, Piazza G, Bikdeli B, PE-EHR+. Abstract 17700: Double Trouble With Identification of Isolated Sub-Segmental Pulmonary Embolism Using ICD-10 Discharge Diagnosis Codes: The PE-EHR+ Study. Circulation. 2023;148(Suppl_1):A17700-A.
  • Bejjani A, Khairani CD, Lo Y-C, Jimenez D, Barco S, Mahajan S, Caraballo C, Secemsky EA, Klok E, Hunsaker A, Aghayev A, Muriel A, Hussain MA, Appah-Sampong A, MOJIBIAN H, Lu Y, Lin Z, Aneja S, Khera R, Goldhaber S, Zhou L, Monreal M, Piazza G, Krumholz HM, Bikdeli B, PE-EHR+. Abstract 17709: ICD-10 Codes Have Low Sensitivity and Suboptimal Positive Predictive Value for Identifying Cases of Pulmonary Embolism With Cor Pulmonale in Electronic Healthcare Records. Circulation. 2023;148(Suppl_1):A17709-A.
  • Bejjani A, Khairani CD, Lo Y-C, Jimenez D, Barco S, Mahajan S, Caraballo C, Klok E, Secemsky EA, Aghayev A, Hunsaker A, Hussain MA, Appah-Sampong A, Khera R, Goldhaber S, Zhou L, Monreal M, Krumholz HM, Piazza G, Bikdeli B. Abstract 379: The Accuracy Of ICD-10 Discharge Diagnosis Codes For Identification Of Isolated Sub-Segmental Pulmonary Embolism: A PE-EHR+ Substudy. Arteriosclerosis, Thrombosis, and Vascular Biology. 2023;43(Suppl_1):A379-A.

2022

  • Wang L, Foer D, MacPhaul E, Lo YC, Bates DW, Zhou L. PASCLex: A Comprehensive Post-Acute Sequelae of COVID-19 (PASC) Symptom Lexicon Derived from Electronic Health Record Clinical Notes. J Biomed Inform. 2022;125:103951. PMID: 34785382; PMCID: PMC8590503. https://pubmed.ncbi.nlm.nih.gov/34785382/ 
  • Himmelstein G, Bates D, Zhou L. Examination of Stigmatizing Language in the Electronic Health Record. JAMA Netw Open. 2022 Jan 4;5(1):e2144967. doi: 10.1001/jamanetworkopen.2021.44967. PMID: 35084481. https://pubmed.ncbi.nlm.nih.gov/35084481/
  • Hua Y, Jiang H, Lin S, Yang J, Plasek JM, Bates DW, Zhou L. Using Twitter Data to Understand Public Perceptions of Approved versus Off-label Use for COVID-19-related Medications. J Am Med Inform Assoc. 2022 Jul 1:ocac114. doi: 10.1093/jamia/ocac114. Epub ahead of print. PMID: 35775946; PMCID: PMC9278189.
  • Vallamkonda S, Ortega CA, Lo YC, Blackley SV, Wang L, Seger DL, Blumenthal KG, Plasek JM, Goss F, Zhou L. Identifying and Reconciling Patients’ Allergy Information Within the Electronic Health Record. Studies in health technology and informatics. 2022 Jun 6;290:120-4.
  • Diamond CJ, Laurentiev J, Yang J, Wint A, Harris KA, Dang TH, Mecker A, Carpenter EB, Tosteson AN, Wright A, Haas JS, Atlas SJ, Zhou L. Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up. Stud Health Technol Inform. 2022 Jun 6;290:433-437. doi: 10.3233/SHTI220112. PMID: 35673051.
    Yerneni S, Shah S, Blackley SV, Ortega C, Blumenthal K, Goss FR, Seger D, Mancini C, Bates DW, Zhou L. Heterogeneity of Drug Allergies and Reaction Lists in Two US Healthcare Systems’ Electronic Health Records. Applied Clinical Informatics. 2022 May 26 (AAM).
  • Cucka B, Biglione B, Zhou L, Phillips EJ, Bassir F, Samarakoon U, Rrapi R, Chand S, Wang L, Alvarez-Arango S, Blumenthal KG, Kroshinsky D. Drug reaction with eosinophilia and systemic symptoms in patients hospitalized with COVID-19: a case series from a large US healthcare system. Br J Dermatol. 2022 Jun 14. doi: 10.1111/bjd.21706. Epub ahead of print. PMID: 35700153.
  • Wang X, Lin Y, Xiong Y, Zhang S, He Y, He Y, Zhang Z, Plasek JM, Zhou L, Bates DW, Tang C. Using an optimized generative model to infer the progression of complications in type 2 diabetes patients. BMC Med Inform Decis Mak. 2022 Jul 1;22(1):174. doi: 10.1186/s12911-022-01915-5. PMID: 35778708; PMCID: PMC9250218.
  • Blumenthal KG, Alvarez-Arango S, Fu X, Kroshinsky D, Choi H, Phillips E, Zhou L. Risk Factors for Vancomycin Drug Reaction With Eosinophilia and Systemic Symptoms Syndrome. JAMA Dermatol. 2022 Nov 2:e223541. doi: 10.1001/jamadermatol.2022.3541. Epub ahead of print. PMID: 36322078; PMCID: PMC9631222.
  • Varghese S, Wang L, Blackley S, Blumenthal KG, Goss FR, Zhou L. Expanding the Reaction Picklist in Electronic Health Records Improves Allergy Documentation. J Allergy Clin Immunol Pract. 2022 Jul 11:S2213-2198(22)00695-X. doi: 10.1016/j.jaip.2022.06.046. Epub ahead of print. PMID: 35835388.
  • Lo YC, Varghese S, Blackley S, Seger DL, Blumenthal KG, Goss FR, Zhou L. Reconciling Allergy Information in the Electronic Health Record After a Drug Challenge Using Natural Language Processing. Front Allergy. 2022 May 10;3:904923. doi: 10.3389/falgy.2022.904923. PMID: 35769562; PMCID: PMC9234873.
  • Wang X, Lin Y, Xiong Y, Zhang S, He Y, He Y, Zhang Z, Plasek JM, Zhou L, Bates DW, Tang C. Using an optimized generative model to infer the progression of complications in type 2 diabetes patients. BMC Med Inform Decis Mak. 2022;22(1):174.
  • Atlas SJ, Tosteson ANA, Burdick TE, Wright A, Breslau ES, Dang TH, Wint AJ, Smith RE, Harris KA, Zhou L, Haas JS. Primary Care Practitioner Perceptions on the Follow-up of Abnormal Cancer Screening Test Results. JAMA Network Open. 2022;5(9):e2234194-e.
  • Li M, Hua Y, Liao Y, Zhou L, Li X, Wang L, Yang J. Tracking the Impact of COVID-19 and Lockdown Policies on Public Mental Health Using Social Media: Infoveillance Study. J Med Internet Res. 2022 Oct 13;24(10):e39676. doi: 10.2196/39676. PMID: 36191167; PMCID: PMC9566822.
  • Miller M, Azrael D, Yenduri R, Barber C, Bowen A, MacPhaul E, Mooney SJ, Zhou L, Goralnick E, Rowhani-Rahbar A. Assessment of the Accuracy of Firearm Injury Intent Coding at 3 US Hospitals. JAMA Network Open. 2022;5(12):e2246429-e.
  • Wang L, Foer D, Zhang Y, Karlson EW, Bates DW, Zhou L. Post-Acute COVID-19 Respiratory Symptoms in Patients with Asthma: An Electronic Health Records-based Study. J Allergy Clin Immunol Pract. 2022 Dec 22:S2213-2198(22)01312-5. doi: 10.1016/j.jaip.2022.12.003. Epub ahead of print. PMID: 36566779; PMCID: PMC9773736.
  • Jin Y, Xiong Y, Shi D, Lin Y, He L, Zhang Y, Plasek JM, Zhou L, Bates DW, Tang C. Learning from undercoded clinical records for automated International Classification of Diseases (ICD) coding. J Am Med Inform Assoc. 2022 Dec 7:ocac230. doi: 10.1093/jamia/ocac230. Epub ahead of print. PMID: 36478240.
  • Wyss R, Plasek JM, Zhou L, Bessette LG, Schneeweiss S, Rassen JA, Tsacogianis T, Lin KJ. Scalable feature engineering from electronic free text notes to supplement confounding adjustment of claims-based pharmacoepidemiologic studies. Clin Pharmacol Ther. 2022 Dec 17. doi: 10.1002/cpt.2826. Epub ahead of print. PMID: 36528788.
  • Bassir F*, Varghese S*, Wang L, Chin YP, Zhou L. The Use of Electronic Health Records to Study Drug-Induced Hypersensitivity Reactions from 2000 to 2021: A Systematic Review. Immunol Allergy Clin North Am. 2022 May;42(2):453-497. doi: 10.1016/j.iac.2022.01.004. Epub 2022 Mar 31. PMID: 35469629.
  • Lo Y, Varghese S, Blackely S, Seger DL, Blumenthal KG, Goss FR, Zhou L. Reconciling Allergy Information in the Electronic Health Record After a Drug Challenge Using Natural Language Processing. Front. Allergy doi: 10.3389/falgy.2022.904923.
  • Tang C, Ma J, Zhou L, Plasek JM, He Y, Xiong Y, Zhu Y, Huang Y, Bates D. Improving Research Patient Data Repositories from a Health Data Industry Viewpoint. J Med Internet Res 2022;24(5):e32845. PMID:
  • Chin YP, Song W, Islam MM, Bates DW, Zhou L, Li YC. Sequential coupling of dry and wet COVID-19 screening to reduce the number of quarantined individuals. Comput Methods Programs Biomed. 2022;218:106715. PMID: 35272147; PMCID: PMC8882032.
  • Phadke NA, Wickner P, Wang L, Zhou L, Mort E, Bates DW, Seguin C, Fu X, Blumenthal KG.  Allergy Safety Events in Healthcare: Development and Application of a Classification Schema Based on Retrospective Review.  J Allergy Clin Immunol Pract. 2022 Apr 7. doi: 10.1016/j.jaip.2022.03.026. Epub ahead of print. PMID: 35398557.
  • Wang L, Varghese S, Bassir F, Lo YC, Ortega CA, Shah S, Blumenthal KG, Phillips EJ, Zhou L. Stevens-Johnson syndrome and toxic epidermal necrolysis: A systematic review of PubMed/MEDLINE case reports from 1980 to 2020. Front Med (Lausanne). 2022;9:949520.
  • Powell N, Elkhalifa S, Guyer A, Garcez T, Sandoe J, Zhou L. Addressing the Challenges of Penicillin Allergy Delabeling With Electronic Health Records and Mobile Applications. J Allergy Clin Immunol Pract. 2022 Nov 8:S2213-2198(22)01140-0. doi: 10.1016/j.jaip.2022.10.037. Epub ahead of print. PMID: 36356924.

2021

  • Wang L, Laurentiev J, Yang J, et al. Development and Validation of a Deep Learning Model for Earlier Detection of Cognitive Decline From Clinical Notes in Electronic Health Records. JAMA Netw Open. 2021;4(11):e2135174. doi:10.1001/jamanetworkopen.2021.35174. https://pubmed.ncbi.nlm.nih.gov/34792589/
  • Rossetti SC, Dykes PC, Knaplund C, Kang MJ, Schnock K, Garcia JP Jr, Fu LH, Chang F, Thai T, Fred M, Korach TZ, Zhou L, Klann JG, Albers D, Schwartz J, Lowenthal G, Jia H, Liu F, Cato K. The Communicating Narrative Concerns Entered by Registered Nurses (CONCERN) Clinical Decision Support Early Warning System: Protocol for a Cluster Randomized Pragmatic Clinical Trial. JMIR Res Protoc. 2021 Dec 10;10(12):e30238. doi: 10.2196/30238. PMID: 34889766; PMCID: PMC8709914.
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin Hypersensitivity Reactions Documented in Electronic Health Records. J Allergy Clin Immunol Pract. 2021 Feb;9(2):906-912. doi: 10.1016/j.jaip.2020.09.027. Epub 2020 Oct 1. PMID: 33011300; PMCID: PMC7870516.
  • Vallamkonda S, Ortega, CA, Lo Y, Blackley SV, Wang L, Seger D, Blumenthal K, Plasek J, Goss F, Zhou L.  Identifying and Reconciling Patients’ Allergy Information within the Electronic Health Record. In MedInfo 2021.
  • Diamond CJ, Laurentiev J, Yang J, Wint A, Harris K, Dang TH, Mecker A, Carpenter EB, Tosteson AN, Wright A, Haas J, Atlas SJ, Zhou L.  Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up. In Medinfo 2021.
  • Tang C, Plasek JM, Zhang S, Xiong Y, Zhu Y, Ma J, Zhou L, Bates DW. The Intersection of Big Data and Epidemiology for Epidemiologic Research: Int J Qual Health Care. 2021 Sep 25;33(3):mzab134. doi: 10.1093/intqhc/mzab134. PMID: 34508642.
  • Zhu X*, Plasek JM*, Tang C*, Zl-Assad W, Zhang Z, Xiong Y, Wang L, Yerneni S, Ortega C, Kang MJ, Zhou L, Bates DW, Dykes PC. Embedding, aligning and reconstructing clinical notes to explore sepsis. BMC Research Notes. 2021. doi: 10.1186/s13104-021-05529-4 ( *these authors contributed equally).
  • Haas JS, Atlas SJ, Wright A, Orav EJ, Aman DG,  Breslau ES,  Burdick TE, Carpenter E, Chang F, Dang T, Diamond CJ, Feldman S, Harris KA, Hort SJ, Housman ML, Mecker A, Lehman CD, Percac-Lima S, Smith R, Wint AJ, Yang J, Zhou L,  Tosteson ANA. Multilevel Follow-up of Cancer Screening (mFOCUS): Protocol for a multilevel intervention to improve the follow-up of abnormal cancer screening test results. Contemporary Clinical Trials. Volume 109. 2021. 106533. ISSN 1551-7144. Doi: 10.1016/j.cct.2021.106533.
  • Yang J, Lian JW, Chin Y, et al. Assessing the Prognostic Significance of Tumor-Infiltrating Lymphocytes in Patients With Melanoma Using Pathologic Features Identified by Natural Language Processing. JAMA Netw Open. 2021;4(9):e2126337. doi:10.1001/jamanetworkopen.2021.26337
  • Tang, C., Plasek, J.M., Xiong, Y. et al. A Clustering Algorithm Based on Document Embedding to Identify Clinical Note Templates. Ann. Data. Sci. 8, 497–515 (2021). https://doi.org/10.1007/s40745-020-00296-8
  • Schnock KO, Kang MJ, Rossetti SC, Garcia J, Lowenthal G, Knaplund C, Chang F, Albers D, Korach TZ, Zhou L, Klann JG, Cato K, Bates DW, Dykes PC. Identifying nursing documentation patterns associated with patient deterioration and recovery from deterioration in critical and acute care settings. International Journal of Medical Informatics. Volume 153. 2021. 104525. ISSN 1386-5056. Doi: 10.1016/j.ijmedinf.2021.104525.
  • Rossetti SC, Knaplund C, Albers D, Dykes PC, Kang MJ, Korach TZ, Zhou L, Schnock K, Garcia J, Schwartz J, Fu LH, Klann JG, Lowenthal G, Cato K. Healthcare Process Modeling to Phenotype Clinician Behaviors for Exploiting the Signal Gain of Clinical Expertise (HPM-ExpertSignals): Development and evaluation of a conceptual framework. Journal of the American Medical Informatics Association, Volume 28, Issue 6. June 2021. Pages 1242–1251. https://doi.org/10.1093/jamia/ocab006
  • Phadke, N.A., Zhou, L., Mancini, C.M. et al. Allergic Reactions in Two Academic Medical Centers. J GEN INTERN MED 36, 1814–1817 (2021). https://doi.org/10.1007/s11606-020-06190-6
  • Korach TZ, Gradwohl S, Messinger A, Bookman K, Cohen K, Zhou L, Goss F. Unsupervised clinical relevancy ranking of structured medical records to retrieve condition-specific information in the emergency department. International Journal of Medical Informatics. Volume 149. 2021. 104410. ISSN 1386-5056. https://doi.org/10.1016/j.ijmedinf.2021.104410.
  • Ortega C, Lo YC, Blackley S, Vallamkonda S, chang F, James O, Yermeni S, Seger D, Wang L, Blumenthal K, Goss F, Wickner P, Zhou L. Methods for Identifying and Reconciling Allergy Information in the Electronic Health Record. Journal of Allergy and Clinical Immunology. 2021. doi: 10.1016/j.jaci.2020.12.597.
  • Wang L, Miloslavsky E, Stone JH, Choi HK, Zhou L*, Wallace ZS*. Topic Modeling to Characterize the Natural History of ANCA- Associated Vasculitis from Clinical Notes: A proof of concept study. Seminars in Arthritis and Rheumatism. 2021 (*these authors contributed equally).
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin. Vancomycin Hypersensitivity Reactions Documented in Electronic Health records. J Allergy Clin Immunol Pract. 2021. doi: 10.1016/j.jaip.2020.09.027
  • Tang C, Plasek JM, Zhang S, Xiong Y, Zhu Y, Ma J, Zhou L, Bates DW. The intersection of big data and epidemiology for epidemiologic research: The impact of the COVID-19 pandemic. International Journal for Quality in Health Care, Volume 33, Issue 4. November 2021. Mzab134. https://doi.org/10.1093/intqhc/mzab134
  • Wang L, Foer D, MacPhaul E, Lo YC, Bates DW, Zhou L. Development of a Post-Acute Sequelae of COVID-19 (PASC) Symptom Lexicon Using Electronic Health Record Clinical Notes. 2021.doi: 10.1101/2021.07.29.21261260.
  • Zhou L, Sordo M. Chapter 5 – Expert systems in medicine. Artificial Intelligence in Medicine. Academic Press. 2021. Pages 75-100. ISBN 9780128212592. https://doi.org/10.1016/B978-0-12-821259-2.00005-3.
  • Fischer S, Zhou L. Use of information and communication technologies in health care: telehealth in 2021. In: the 8th edition of the survey on the use of information and communication technologies in the Brazilian healthcare facilities – ICT in Health 2021.

2020

  • Shi D, Tang C, Blackley SV, Wang L, Yang J, He Y, Bennett SI, Xiong Y, Shi X, Zhou L, Bates DW. An annotated dataset of tongue images supporting geriatric disease diagnosis. Data in Brief. Volume 32. 2020. 106153. ISSN 2352-3409. doi: 10.1016/j.dib.2020.106153.
  • Chang WC, Abe R, et al. SJS/TEN 2019: From science to translation. Journal of Dermatological Science. Volume 98, Issue 1. 2020. Pages 2-12. ISSN 0923-1811. Doi: 10.1016/j.jdermsci.2020.02.003.
  • Banerji A, Lai KH, Li Y, Saff RR, Camargo CA Jr, Blumenthal KG, Zhou L. Natural Language Processing Combined with ICD-9-CM Codes as a Novel Method to Study the Epidemiology of Allergic Drug Reactions. J Allergy Clin Immunol Pract. 2020 Mar;8(3):1032-1038.e1. doi: 10.1016/j.jaip.2019.12.007. Epub 2019 Dec 16. PMID: 31857264; PMCID: PMC7064405.
  • Korach Z T, Yerneni S, Einbinder J, Kallenberg C, Zhou L. Facilitating information extraction without annotated data using unsupervised and positive-unlabeled learning. AMIA … Annual Symposium proceedings. AMIA Symposium. 2020.
  • Wang L, Foer D, Bates DW, Boyce JA, Zhou L. Risk factors for hospitalization, intensive care and mortality among patients with asthma and COVID-19. J Allergy Clin Immunol. 2020 Jul 28:S0091-6749(20)31039-3. doi: 10.1016/j.jaci.2020.07.018. [Epub ahead of print]
  • Yang J, Landrum MB, Zhou L*, Busch AB*. Disparities in Outpatient Visits for Mental Health and/or Substance Use Disorders During the COVID-19 Surge and Partial Reopening in Massachusetts. General Hospital Psychiatry. 2020 Oct. ( *these authors contributed equally).
  • Wang D, Liu J, Zhou L, Bates DW, Li YC. Assessing the International Transferability of a Machine Learning Model for Detecting Medication Error in the General Internal Medicine Clinic: A Multicenter Preliminary Validation Study. Journal of Medical Internet Research. 2020.
  • Yang J, Wang L, Phaske NA, Wickner PG, Mancini CM, Blumenthal KG*, Zhou L*. Development and validation of a deep learning model to detect allergic reactions of safety event reports across hospitals: 2004-2019. JAMA Netw Open. 2020 (*these authors contributed equally).
  • Lacey RB, Wang L, Fu X, Wallace ZS, Long A, Zhang Y, Camargo CA, Blumenthal KG. COVID-19 severity in asthma patients: A multi-center matched cohort study. Journal of Asthma. In Press
  • Plasek JM, Tang C, Zhu Y, Huang Y, Bates DW. Following Data as it Crosses Borders During the COVID-19 Pandemic, Journal of the American Medical Informatics Association. 2020. doi:10.1093/jamia/ocaa063
  • Tang C, Plasek JM, Zhu Y, Huang Y. Data Sovereigns for the World Economy. Humanities & Social Sciences Communications. 2020. (in press)
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin. Vancomycin hypersensitivity reactions documented in electronic health records. J Allergy Clin Immunol Pract. 2020.doi: https://doi.org/10.1016/j.jaip.2020.09.027
  • Wang L, Miloslavsky E, Stone JH, Choi HK, Zhou L*, Wallace ZS*. Topic Modeling to Characterize the Natural History of ANCA- Associated Vasculitis from Clinical Notes: A Proof of Concept Study Seminars in Arthritis and Rheumatism. Seminars in Arthritis and Rheumatism. 2020 (*these authors contributed equally).
  • Shi D, Tang C, Blackley SV, Wang L, Yang J, He Y, Bennet S, Xiong Y, Shi X, Zhou L, Bates DW. An annotated dataset of tongue images supporting geriatric disease diagnosis. Data in Brief. 2020.
  • Phadke NA, Zhou L, Mancini CM, Yang J, Wang W, Wickner P, Fu X, Blumenthal KG. Allergic Reactions in Two Academic Medical Centers. J Gen Intern Med. 2020, In Press.
  • Korach ZT, Einbinder J, Kallenberg C, Yerneni S, Zhou L. Facilitating information extraction without annotated data using unsupervised and positive-unlabeled learning. AMIA Annu Symp Proc. 2020.
  • Blackley SV, MacPhaul E, Martin B, Song W, Suzuki J, Zhou L. Using Natural Language Processing and Machine Learning to Identify Hospitalized Patients with Opioid Use Disorder AMIA Annu Symp Proc. 2020.
  • Wang L, Blackley SV, Blumenthal KG, Yerneni S, Goss FR, Lo YC, Shah SN, Ortega CA, Korach ZT, Seger DL, Zhou L. A dynamic reaction picklist for improving allergy reaction documentation in the electronic health record. Journal of the American Medical Informatics Association. 2020 Jun 1;27(6):917-23.
  • Blackley SV, Schubert VD, Goss FR, Al Assad W, Garabedian, PM, Zhou, L. Physician Use of Speech Recognition versus Typing in Clinical Documentation: A Controlled Observational Study. Int J Med Inform. 2020 May 11. doi: 10.1016/j.ijmedinf.2020.104178. [Epub ahead of print]
  • Tang C, Plasek J, Shi X, Wan M, Zhang H, Kang MJ, Wang L, Dulgarian SM, Xiong Y, Ma J, Bates DW, Zhou. Estimating Time to Progression of Chronic Obstructive Pulmonary Disease with Tolerance. IEEE J Biomed Health Inform. 2020 May 4. doi: 10.1109/JBHI.2020.2992259. [Epub ahead of print]
  • Tang C, Plasek JM, Xiong Y, Bates DW, Zhou L. A Clustering Algorithm Based on Document Embedding to Identify Clinical Note Templates. Annals of Data Science:1-19. 2020. https://doi.org/10.1007/s40745-020-00296-8.
  • Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC. SJS/TEN 2019: From science to translation. J Dermatol Sci. 2020 Mar 7. pii: S0923-1811(20)30064-5. doi: 10.1016/j.jdermsci.2020.02.003. [Epub ahead of print] Review. PubMed PMID: 32192826.
  • Spasić I, Uzuner Ö, Zhou L. Emerging clinical applications of text analytics. Int J Med Inform. 2020;134:103974. doi:10.1016/j.ijmedinf.2019.103974

2019

2018

  • Tang C, Plasek J, Zhang H, Xiong Y, Bates DW, and Zhou L. A Deep Learning Approach to Handling Temporal Variation in Chronic Obstructive Pulmonary Disease Progression. In 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM): 502-509. Madrid, Spain.
  • Wong J, Horwitz MM, Zhou L, Toh S. Using Machine Learning to Identify Health Outcomes from Electronic Health Record Data. Curr Epidemiol Rep. 2018 Dec;5(4):331-342. doi: 10.1007/s40471-018-0165-9. Epub 2018 Sep 20. PMID: 30555773.
  • Wolfson AR, Zhou L, Li Y, Phadke NA, Chow OA, Blumenthal KG. Drug Rash Eosinophilia and Systemic Symptoms (DRESS) Syndrome Identified in the Electronic Health Record Allergy Module. The Journal of Allergy and Clinical Immunology: In Practice. 2018 Aug 31. pii: S2213-2198(18)30548-8. doi: 10.1016/j.jaip.2018.08.013.
  • Saff RR, Li Y, Santhanakrishnan N, Camargo CA Jr, Blumenthal KG, Zhou L, Banerji A. Identification of Inpatient Allergic Drug Reactions Using ICD-9-CM Codes. J Allergy Clin Immunol Pract. 2018 Jul 31. pii: S2213-2198(18)30457-4. doi: 10.1016/j.jaip.2018.07.022.
  • Zhou L, Blackley SV, Kowalski L, Doan R, Acker WW, Landman AB, Kontrient E, Mack D, Meteer M, Bates DW, Goss FR. Analysis of Errors in Dictated Clinical Documents Assisted by Speech Recognition Software and Professional Transcriptionists. JAMA Network Open. 2018 Jul 6;1(3):e180530-.
  • Topaz, M, Schaffer, A, Lai, KH, Korach Z, Einbinder J, Zhou L. Medical Malpractice Trends: Errors in Automated Speech Recognition. J Med Syst (2018) 42: 153. https://doi.org/10.1007/s10916-018-1011-9.
  • Wang L, Lakin J, Riley C, Korach Z, Frain L, Zhou L. Disease Trajectories and End-of-Life Care for Dementias: Latent Topic Modeling and Trend Analysis Using Clinical Notes. AMIA Annu Symp Proc. 2018 Dec 5;2018:1056-1065. PMID: 30815148 PMCID: PMC6371376.
  • Tang C, Plasek JM, Xiong Y, Bates DW, Zhou L. Clustering Similar Clinical Documents in Electronic Health Records. International Conference on Data Science, ICDS 2018.
  • Wong A, Plasek JM, Montecalvo SP, Zhou, L. Natural language processing and its implications for the future of medication safety: a narrative review of recent advances and challenges. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy. 2018 Jun 9. doi: 10.1002/phar.2151
  • Blumenthal KG, Li Y, Acker WW, Chang Y, Banerji A, Ghaznavi S, Camargo CA, Zhou L. Multiple Drug Intolerance Syndrome and Multiple Drug Allergy Syndrome: Epidemiology and Associations with Anxiety and Depression. Allergy. 2018 Mar 25. doi: 10.1111/all.13440.
  • Topaz M, Schaffer A, Lai K, Korach T, Einbinder J, Zhou L. Malpractice cases involving allergy information in the electronic health records: implications for safer systems. Perspectives of Health Information Management. 2018: 1-9.
  • Goss FR, Lai KH, Topaz M, Acker WW, Kowalski L, Plasek JM, Blumenthal KG, Seger DL, Slight SP, Wah Fung K, Chang FY, Bates DW, Zhou L. A value set for documenting adverse reactions in electronic health records. J Am Med Inform Assoc. 2018 Jun 1;25(6):661-669. doi: 10.1093/jamia/ocx139.

2017

2016

2015

2014

2013

2012

2011

2009

  • Zhou L, Soran CS, Jenter CA, Volk LA, Orav EJ, Bates DW, Simon SR. The Relationship between Electronic Health Record Use and Quality of Care over Time. J Am Med Inform Assoc 2009; 16(4): 457-64. PMID: 19390094.
  • Zhou L, Goldberg H, Pabbathi D, Wright A, Goldman DS, Van Putten C, Barley A, Rocha RA. Terminology Modeling for an Enterprise Laboratory Orders Catalog. AMIA Annu Symp Proc. 2009 Nov:735-739. PMID: 20351950.

=< 2008

  • Chen ES, Zhou L, Kashyap V, Schaeffer M, Dykes PC, Goldberg HS. Early Experiences in Evolving an Enterprise-Wide Information Model for Laboratory and Clinical Observations. AMIA Annu Symp Proc. 2008 Nov 6:106-10. PMID: 18999078.
  • Zhou L, Parsons S, Hripcsak G. The Evaluation of a Temporal Reasoning System in Processing Clinical Discharge Summaries. J Am Med Inform Assoc 2008 Jan-Feb; 15(1): 99-106. PMID: 17947618.
  • Zhou L, Tao Y, Cimino JJ, Chen ES, Liu H, Lussier YA, Hripcsak G, Friedman C. Terminology Model Discovery Using Natural Language Processing and Visualization Techniques. J Biomed Inform 2006 Dec;39(6):626-36. PMID: 16360342.
  • Zhou L, Melton G, Parsons S, Hripcsak G. A Temporal Constraint Structure for Extracting Temporal Information from Clinical Narrative. J Biomed Inform 2006 Aug; 39(4):424-439. PMID: 16169282.
  • Zhou L, Hripcsak G. Temporal Reasoning with Medical Data – A Review with Emphasis on Medical Natural Language Processing. J Biomed Inform 2007 Apr;40(2):183-202. PMID: 17317332.
  • Zhou L, Friedman C, Parsons S, Hripcsak G. System Architecture for Temporal Information Extraction, Representation and Reasoning in Clinical Narrative Reports. AMIA Annu Symp Proc. 2005; 869-873. PMID: 16779164.
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