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2022

  • Bassir F*, Varghese S*, Wang L, Chin YP, Zhou L. The Use of Electronic Health Records to Study Drug-Induced Hypersensitivity Reactions from 2000 to 2021: A Systematic Review. Immunol Allergy Clin North Am. 2022 May;42(2):453-497. doi: 10.1016/j.iac.2022.01.004. Epub 2022 Mar 31. PMID: 35469629.
  • Himmelstein G, Bates D, Zhou L. Examination of Stigmatizing Language in the Electronic Health Record. JAMA Netw Open. 2022 Jan 4;5(1):e2144967. doi: 10.1001/jamanetworkopen.2021.44967. PMID: 35084481. https://pubmed.ncbi.nlm.nih.gov/35084481/
  • Lo Y, Varghese S, Blackely S, Seger DL, Blumenthal KG, Goss FR, Zhou L. Reconciling Allergy Information in the Electronic Health Record After a Drug Challenge Using Natural Language Processing. Front. Allergy doi: 10.3389/falgy.2022.904923.
  • Tang C, Ma J, Zhou L, Plasek JM, He Y, Xiong Y, Zhu Y, Huang Y, Bates D. Improving Research Patient Data Repositories from a Health Data Industry Viewpoint. J Med Internet Res 2022;24(5):e32845. PMID:
  • Chin YP, Song W, Islam MM, Bates DW, Zhou L, Li YC. Sequential coupling of dry and wet COVID-19 screening to reduce the number of quarantined individuals. Comput Methods Programs Biomed. 2022;218:106715. PMID: 35272147; PMCID: PMC8882032.
  • Phadke NA, Wickner P, Wang L, Zhou L, Mort E, Bates DW, Seguin C, Fu X, Blumenthal KG.  Allergy Safety Events in Healthcare: Development and Application of a Classification Schema Based on Retrospective Review.  J Allergy Clin Immunol Pract. 2022 Apr 7. doi: 10.1016/j.jaip.2022.03.026. Epub ahead of print. PMID: 35398557.
  • Wang L, Foer D, MacPhaul E, Lo YC, Bates DW, Zhou L. PASCLex: A Comprehensive Post-Acute Sequelae of COVID-19 (PASC) Symptom Lexicon Derived from Electronic Health Record Clinical Notes. J Biomed Inform. 2022;125:103951. PMID: 34785382; PMCID: PMC8590503. https://pubmed.ncbi.nlm.nih.gov/34785382/ 

2021

  • Wang L, Laurentiev J, Yang J, et al. Development and Validation of a Deep Learning Model for Earlier Detection of Cognitive Decline From Clinical Notes in Electronic Health Records. JAMA Netw Open. 2021;4(11):e2135174. doi:10.1001/jamanetworkopen.2021.35174. https://pubmed.ncbi.nlm.nih.gov/34792589/
  • Rossetti SC, Dykes PC, Knaplund C, Kang MJ, Schnock K, Garcia JP Jr, Fu LH, Chang F, Thai T, Fred M, Korach TZ, Zhou L, Klann JG, Albers D, Schwartz J, Lowenthal G, Jia H, Liu F, Cato K. The Communicating Narrative Concerns Entered by Registered Nurses (CONCERN) Clinical Decision Support Early Warning System: Protocol for a Cluster Randomized Pragmatic Clinical Trial. JMIR Res Protoc. 2021 Dec 10;10(12):e30238. doi: 10.2196/30238. PMID: 34889766; PMCID: PMC8709914.
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin Hypersensitivity Reactions Documented in Electronic Health Records. J Allergy Clin Immunol Pract. 2021 Feb;9(2):906-912. doi: 10.1016/j.jaip.2020.09.027. Epub 2020 Oct 1. PMID: 33011300; PMCID: PMC7870516.
  • Vallamkonda S, Ortega, CA, Lo Y, Blackley SV, Wang L, Seger D, Blumenthal K, Plasek J, Goss F, Zhou L.  Identifying and Reconciling Patients’ Allergy Information within the Electronic Health Record. In MedInfo 2021.
  • Diamond CJ, Laurentiev J, Yang J, Wint A, Harris K, Dang TH, Mecker A, Carpenter EB, Tosteson AN, Wright A, Haas J, Atlas SJ, Zhou L.  Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up. In Medinfo 2021.
  • Tang C, Plasek JM, Zhang S, Xiong Y, Zhu Y, Ma J, Zhou L, Bates DW. The Intersection of Big Data and Epidemiology for Epidemiologic Research: Int J Qual Health Care. 2021 Sep 25;33(3):mzab134. doi: 10.1093/intqhc/mzab134. PMID: 34508642.
  • Zhu X*, Plasek JM*, Tang C*, Zl-Assad W, Zhang Z, Xiong Y, Wang L, Yerneni S, Ortega C, Kang MJ, Zhou L, Bates DW, Dykes PC. Embedding, aligning and reconstructing clinical notes to explore sepsis. BMC Research Notes. 2021. doi: 10.1186/s13104-021-05529-4 ( *these authors contributed equally).
  • Haas JS, Atlas SJ, Wright A, Orav EJ, Aman DG,  Breslau ES,  Burdick TE, Carpenter E, Chang F, Dang T, Diamond CJ, Feldman S, Harris KA, Hort SJ, Housman ML, Mecker A, Lehman CD, Percac-Lima S, Smith R, Wint AJ, Yang J, Zhou L,  Tosteson ANA. Multilevel Follow-up of Cancer Screening (mFOCUS): Protocol for a multilevel intervention to improve the follow-up of abnormal cancer screening test results. Contemporary Clinical Trials. Volume 109. 2021. 106533. ISSN 1551-7144. Doi: 10.1016/j.cct.2021.106533.
  • Yang J, Lian JW, Chin Y, et al. Assessing the Prognostic Significance of Tumor-Infiltrating Lymphocytes in Patients With Melanoma Using Pathologic Features Identified by Natural Language Processing. JAMA Netw Open. 2021;4(9):e2126337. doi:10.1001/jamanetworkopen.2021.26337
  • Tang, C., Plasek, J.M., Xiong, Y. et al. A Clustering Algorithm Based on Document Embedding to Identify Clinical Note Templates. Ann. Data. Sci. 8, 497–515 (2021). https://doi.org/10.1007/s40745-020-00296-8
  • Schnock KO, Kang MJ, Rossetti SC, Garcia J, Lowenthal G, Knaplund C, Chang F, Albers D, Korach TZ, Zhou L, Klann JG, Cato K, Bates DW, Dykes PC. Identifying nursing documentation patterns associated with patient deterioration and recovery from deterioration in critical and acute care settings. International Journal of Medical Informatics. Volume 153. 2021. 104525. ISSN 1386-5056. Doi: 10.1016/j.ijmedinf.2021.104525.
  • Rossetti SC, Knaplund C, Albers D, Dykes PC, Kang MJ, Korach TZ, Zhou L, Schnock K, Garcia J, Schwartz J, Fu LH, Klann JG, Lowenthal G, Cato K. Healthcare Process Modeling to Phenotype Clinician Behaviors for Exploiting the Signal Gain of Clinical Expertise (HPM-ExpertSignals): Development and evaluation of a conceptual framework. Journal of the American Medical Informatics Association, Volume 28, Issue 6. June 2021. Pages 1242–1251. https://doi.org/10.1093/jamia/ocab006
  • Phadke, N.A., Zhou, L., Mancini, C.M. et al. Allergic Reactions in Two Academic Medical Centers. J GEN INTERN MED 36, 1814–1817 (2021). https://doi.org/10.1007/s11606-020-06190-6
  • Korach TZ, Gradwohl S, Messinger A, Bookman K, Cohen K, Zhou L, Goss F. Unsupervised clinical relevancy ranking of structured medical records to retrieve condition-specific information in the emergency department. International Journal of Medical Informatics. Volume 149. 2021. 104410. ISSN 1386-5056. https://doi.org/10.1016/j.ijmedinf.2021.104410.
  • Ortega C, Lo YC, Blackley S, Vallamkonda S, chang F, James O, Yermeni S, Seger D, Wang L, Blumenthal K, Goss F, Wickner P, Zhou L. Methods for Identifying and Reconciling Allergy Information in the Electronic Health Record. Journal of Allergy and Clinical Immunology. 2021. doi: 10.1016/j.jaci.2020.12.597.
  • Wang L, Miloslavsky E, Stone JH, Choi HK, Zhou L*, Wallace ZS*. Topic Modeling to Characterize the Natural History of ANCA- Associated Vasculitis from Clinical Notes: A proof of concept study. Seminars in Arthritis and Rheumatism. 2021 (*these authors contributed equally).
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin. Vancomycin Hypersensitivity Reactions Documented in Electronic Health records. J Allergy Clin Immunol Pract. 2021. doi: 10.1016/j.jaip.2020.09.027
  • Tang C, Plasek JM, Zhang S, Xiong Y, Zhu Y, Ma J, Zhou L, Bates DW. The intersection of big data and epidemiology for epidemiologic research: The impact of the COVID-19 pandemic. International Journal for Quality in Health Care, Volume 33, Issue 4. November 2021. Mzab134. https://doi.org/10.1093/intqhc/mzab134
  • Wang L, Foer D, MacPhaul E, Lo YC, Bates DW, Zhou L. Development of a Post-Acute Sequelae of COVID-19 (PASC) Symptom Lexicon Using Electronic Health Record Clinical Notes. 2021.doi: 10.1101/2021.07.29.21261260.
  • Zhou L, Sordo M. Chapter 5 – Expert systems in medicine. Artificial Intelligence in Medicine. Academic Press. 2021. Pages 75-100. ISBN 9780128212592. https://doi.org/10.1016/B978-0-12-821259-2.00005-3.
  • Fischer S, Zhou L. Use of information and communication technologies in health care: telehealth in 2021. In: the 8th edition of the survey on the use of information and communication technologies in the Brazilian healthcare facilities – ICT in Health 2021.

2020

  • Shi D, Tang C, Blackley SV, Wang L, Yang J, He Y, Bennett SI, Xiong Y, Shi X, Zhou L, Bates DW. An annotated dataset of tongue images supporting geriatric disease diagnosis. Data in Brief. Volume 32. 2020. 106153. ISSN 2352-3409. doi: 10.1016/j.dib.2020.106153.
  • Chang WC, Abe R, et al. SJS/TEN 2019: From science to translation. Journal of Dermatological Science. Volume 98, Issue 1. 2020. Pages 2-12. ISSN 0923-1811. Doi: 10.1016/j.jdermsci.2020.02.003.
  • Banerji A, Lai KH, Li Y, Saff RR, Camargo CA Jr, Blumenthal KG, Zhou L. Natural Language Processing Combined with ICD-9-CM Codes as a Novel Method to Study the Epidemiology of Allergic Drug Reactions. J Allergy Clin Immunol Pract. 2020 Mar;8(3):1032-1038.e1. doi: 10.1016/j.jaip.2019.12.007. Epub 2019 Dec 16. PMID: 31857264; PMCID: PMC7064405.
  • Korach Z T, Yerneni S, Einbinder J, Kallenberg C, Zhou L. Facilitating information extraction without annotated data using unsupervised and positive-unlabeled learning. AMIA … Annual Symposium proceedings. AMIA Symposium. 2020.
  • Wang L, Foer D, Bates DW, Boyce JA, Zhou L. Risk factors for hospitalization, intensive care and mortality among patients with asthma and COVID-19. J Allergy Clin Immunol. 2020 Jul 28:S0091-6749(20)31039-3. doi: 10.1016/j.jaci.2020.07.018. [Epub ahead of print]
  • Yang J, Landrum MB, Zhou L*, Busch AB*. Disparities in Outpatient Visits for Mental Health and/or Substance Use Disorders During the COVID-19 Surge and Partial Reopening in Massachusetts. General Hospital Psychiatry. 2020 Oct. ( *these authors contributed equally).
  • Wang D, Liu J, Zhou L, Bates DW, Li YC. Assessing the International Transferability of a Machine Learning Model for Detecting Medication Error in the General Internal Medicine Clinic: A Multicenter Preliminary Validation Study. Journal of Medical Internet Research. 2020.
  • Yang J, Wang L, Phaske NA, Wickner PG, Mancini CM, Blumenthal KG*, Zhou L*. Development and validation of a deep learning model to detect allergic reactions of safety event reports across hospitals: 2004-2019. JAMA Netw Open. 2020 (*these authors contributed equally).
  • Lacey RB, Wang L, Fu X, Wallace ZS, Long A, Zhang Y, Camargo CA, Blumenthal KG. COVID-19 severity in asthma patients: A multi-center matched cohort study. Journal of Asthma. In Press
  • Plasek JM, Tang C, Zhu Y, Huang Y, Bates DW. Following Data as it Crosses Borders During the COVID-19 Pandemic, Journal of the American Medical Informatics Association. 2020. doi:10.1093/jamia/ocaa063
  • Tang C, Plasek JM, Zhu Y, Huang Y. Data Sovereigns for the World Economy. Humanities & Social Sciences Communications. 2020. (in press)
  • Alvarez-Arango S, Yerneni S, Tang O, Zhou L, Mancini CM, Blackley SV, Keet CA, Blumenthal KG. Vancomycin. Vancomycin hypersensitivity reactions documented in electronic health records. J Allergy Clin Immunol Pract. 2020.doi: https://doi.org/10.1016/j.jaip.2020.09.027
  • Wang L, Miloslavsky E, Stone JH, Choi HK, Zhou L*, Wallace ZS*. Topic Modeling to Characterize the Natural History of ANCA- Associated Vasculitis from Clinical Notes: A Proof of Concept Study Seminars in Arthritis and Rheumatism. Seminars in Arthritis and Rheumatism. 2020 (*these authors contributed equally).
  • Shi D, Tang C, Blackley SV, Wang L, Yang J, He Y, Bennet S, Xiong Y, Shi X, Zhou L, Bates DW. An annotated dataset of tongue images supporting geriatric disease diagnosis. Data in Brief. 2020.
  • Phadke NA, Zhou L, Mancini CM, Yang J, Wang W, Wickner P, Fu X, Blumenthal KG. Allergic Reactions in Two Academic Medical Centers. J Gen Intern Med. 2020, In Press.
  • Korach ZT, Einbinder J, Kallenberg C, Yerneni S, Zhou L. Facilitating information extraction without annotated data using unsupervised and positive-unlabeled learning. AMIA Annu Symp Proc. 2020.
  • Blackley SV, MacPhaul E, Martin B, Song W, Suzuki J, Zhou L. Using Natural Language Processing and Machine Learning to Identify Hospitalized Patients with Opioid Use Disorder AMIA Annu Symp Proc. 2020.
  • Wang L, Blackley SV, Blumenthal KG, Yerneni S, Goss FR, Lo YC, Shah SN, Ortega CA, Korach ZT, Seger DL, Zhou L. A dynamic reaction picklist for improving allergy reaction documentation in the electronic health record. Journal of the American Medical Informatics Association. 2020 Jun 1;27(6):917-23.
  • Blackley SV, Schubert VD, Goss FR, Al Assad W, Garabedian, PM, Zhou, L. Physician Use of Speech Recognition versus Typing in Clinical Documentation: A Controlled Observational Study. Int J Med Inform. 2020 May 11. doi: 10.1016/j.ijmedinf.2020.104178. [Epub ahead of print]
  • Tang C, Plasek J, Shi X, Wan M, Zhang H, Kang MJ, Wang L, Dulgarian SM, Xiong Y, Ma J, Bates DW, Zhou. Estimating Time to Progression of Chronic Obstructive Pulmonary Disease with Tolerance. IEEE J Biomed Health Inform. 2020 May 4. doi: 10.1109/JBHI.2020.2992259. [Epub ahead of print]
  • Tang C, Plasek JM, Xiong Y, Bates DW, Zhou L. A Clustering Algorithm Based on Document Embedding to Identify Clinical Note Templates. Annals of Data Science:1-19. 2020. https://doi.org/10.1007/s40745-020-00296-8.
  • Chang WC, Abe R, Anderson P, Anderson W, Ardern-Jones MR, Beachkofsky TM, Bellón T, Biala AK, Bouchard C, Cavalleri GL, Chapman N, Chodosh J, Choi HK, Cibotti RR, Divito SJ, Dewar K, Dehaeck U, Etminan M, Forbes D, Fuchs E, Goldman JL, Holmes JH 4th, Hope EA, Hung SI, Hsieh CL, Iovieno A, Jagdeo J, Kim MK, Koelle DM, Lacouture ME, Le Pallec S, Lehloenya RJ, Lim R, Lowe A, McCawley J, McCawley J, Micheletti RG, Mockenhaupt M, Niemeyer K, Norcross MA, Oboh D, Olteanu C, Pasieka HB, Peter J, Pirmohamed M, Rieder M, Saeed HN, Shear NH, Shieh C, Straus S, Sukasem C, Sung C, Trubiano JA, Tsou SY, Ueta M, Volpi S, Wan C, Wang H, Wang ZQ, Weintraub J, Whale C, Wheatley LM, Whyte-Croasdaile S, Williams KB, Wright G, Yeung SN, Zhou L, Chung WH, Phillips EJ, Carleton BC. SJS/TEN 2019: From science to translation. J Dermatol Sci. 2020 Mar 7. pii: S0923-1811(20)30064-5. doi: 10.1016/j.jdermsci.2020.02.003. [Epub ahead of print] Review. PubMed PMID: 32192826.
  • Spasić I, Uzuner Ö, Zhou L. Emerging clinical applications of text analytics. Int J Med Inform. 2020;134:103974. doi:10.1016/j.ijmedinf.2019.103974

2019

2018

  • Tang C, Plasek J, Zhang H, Xiong Y, Bates DW, and Zhou L. A Deep Learning Approach to Handling Temporal Variation in Chronic Obstructive Pulmonary Disease Progression. In 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM): 502-509. Madrid, Spain.
  • Wong J, Horwitz MM, Zhou L, Toh S. Using Machine Learning to Identify Health Outcomes from Electronic Health Record Data. Curr Epidemiol Rep. 2018 Dec;5(4):331-342. doi: 10.1007/s40471-018-0165-9. Epub 2018 Sep 20. PMID: 30555773.
  • Wolfson AR, Zhou L, Li Y, Phadke NA, Chow OA, Blumenthal KG. Drug Rash Eosinophilia and Systemic Symptoms (DRESS) Syndrome Identified in the Electronic Health Record Allergy Module. The Journal of Allergy and Clinical Immunology: In Practice. 2018 Aug 31. pii: S2213-2198(18)30548-8. doi: 10.1016/j.jaip.2018.08.013.
  • Saff RR, Li Y, Santhanakrishnan N, Camargo CA Jr, Blumenthal KG, Zhou L, Banerji A. Identification of Inpatient Allergic Drug Reactions Using ICD-9-CM Codes. J Allergy Clin Immunol Pract. 2018 Jul 31. pii: S2213-2198(18)30457-4. doi: 10.1016/j.jaip.2018.07.022.
  • Zhou L, Blackley SV, Kowalski L, Doan R, Acker WW, Landman AB, Kontrient E, Mack D, Meteer M, Bates DW, Goss FR. Analysis of Errors in Dictated Clinical Documents Assisted by Speech Recognition Software and Professional Transcriptionists. JAMA Network Open. 2018 Jul 6;1(3):e180530-.
  • Topaz, M, Schaffer, A, Lai, KH, Korach Z, Einbinder J, Zhou L. Medical Malpractice Trends: Errors in Automated Speech Recognition. J Med Syst (2018) 42: 153. https://doi.org/10.1007/s10916-018-1011-9.
  • Wang L, Lakin J, Riley C, Korach Z, Frain L, Zhou L. Disease Trajectories and End-of-Life Care for Dementias: Latent Topic Modeling and Trend Analysis Using Clinical Notes. AMIA Annu Symp Proc. 2018 Dec 5;2018:1056-1065. PMID: 30815148 PMCID: PMC6371376.
  • Tang C, Plasek JM, Xiong Y, Bates DW, Zhou L. Clustering Similar Clinical Documents in Electronic Health Records. International Conference on Data Science, ICDS 2018.
  • Wong A, Plasek JM, Montecalvo SP, Zhou, L. Natural language processing and its implications for the future of medication safety: a narrative review of recent advances and challenges. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy. 2018 Jun 9. doi: 10.1002/phar.2151
  • Blumenthal KG, Li Y, Acker WW, Chang Y, Banerji A, Ghaznavi S, Camargo CA, Zhou L. Multiple Drug Intolerance Syndrome and Multiple Drug Allergy Syndrome: Epidemiology and Associations with Anxiety and Depression. Allergy. 2018 Mar 25. doi: 10.1111/all.13440.
  • Topaz M, Schaffer A, Lai K, Korach T, Einbinder J, Zhou L. Malpractice cases involving allergy information in the electronic health records: implications for safer systems. Perspectives of Health Information Management. 2018: 1-9.
  • Goss FR, Lai KH, Topaz M, Acker WW, Kowalski L, Plasek JM, Blumenthal KG, Seger DL, Slight SP, Wah Fung K, Chang FY, Bates DW, Zhou L. A value set for documenting adverse reactions in electronic health records. J Am Med Inform Assoc. 2018 Jun 1;25(6):661-669. doi: 10.1093/jamia/ocx139.

2017

2016

2015

2014

2013

2012

2011

2009

  • Zhou L, Soran CS, Jenter CA, Volk LA, Orav EJ, Bates DW, Simon SR. The Relationship between Electronic Health Record Use and Quality of Care over Time. J Am Med Inform Assoc 2009; 16(4): 457-64. PMID: 19390094.
  • Zhou L, Goldberg H, Pabbathi D, Wright A, Goldman DS, Van Putten C, Barley A, Rocha RA. Terminology Modeling for an Enterprise Laboratory Orders Catalog. AMIA Annu Symp Proc. 2009 Nov:735-739. PMID: 20351950.

=< 2008

  • Chen ES, Zhou L, Kashyap V, Schaeffer M, Dykes PC, Goldberg HS. Early Experiences in Evolving an Enterprise-Wide Information Model for Laboratory and Clinical Observations. AMIA Annu Symp Proc. 2008 Nov 6:106-10. PMID: 18999078.
  • Zhou L, Parsons S, Hripcsak G. The Evaluation of a Temporal Reasoning System in Processing Clinical Discharge Summaries. J Am Med Inform Assoc 2008 Jan-Feb; 15(1): 99-106. PMID: 17947618.
  • Zhou L, Tao Y, Cimino JJ, Chen ES, Liu H, Lussier YA, Hripcsak G, Friedman C. Terminology Model Discovery Using Natural Language Processing and Visualization Techniques. J Biomed Inform 2006 Dec;39(6):626-36. PMID: 16360342.
  • Zhou L, Melton G, Parsons S, Hripcsak G. A Temporal Constraint Structure for Extracting Temporal Information from Clinical Narrative. J Biomed Inform 2006 Aug; 39(4):424-439. PMID: 16169282.
  • Zhou L, Hripcsak G. Temporal Reasoning with Medical Data – A Review with Emphasis on Medical Natural Language Processing. J Biomed Inform 2007 Apr;40(2):183-202. PMID: 17317332.
  • Zhou L, Friedman C, Parsons S, Hripcsak G. System Architecture for Temporal Information Extraction, Representation and Reasoning in Clinical Narrative Reports. AMIA Annu Symp Proc. 2005; 869-873. PMID: 16779164.
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